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Cells were collected for Western blot analysis to pick clones expressing comparable EPOP WT and EPOP D5

This point deserves emphasis

Neuropilin-2, a novel member of the neuropilin family, is a high affinity receptor for the semaphorins Sema E and Sema IV but Not Sema III

We used an regression approach to pre-adjust for peptide, similar to what we did previously for phosphorylation data 81 : where is the abundance level for PTM j for individual i , is the intercept, peptide[ ij ] is the contribution of the corresponding unmodified peptide for PTM j for individual i , and i is the error for individual i , modeled as i N(0, 2 )